How Pindel Find Out Long Inserted Sequence?
the current version of pindel, v0.2.4, is able to find out and report long insertions. However its user manual didn't note about this. I want to know how it find it, because according to the split reads strategy, it seems impossible.
And according to http://seqanswers.com/forums/showthread.php?t=18083 (#8), using -z option can report the exact inserted sequence. Really?
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bill-zt •
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bill-zt •
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pindel uses kmer overlap to build a long fragment but this module is still being modified and unstable.
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