Hi, I am trying to run GEM to create mappability file and get the following errors. I wonder if someone can give me a solution. …

Hi, Can anyone tell me how can I find the ground truth set of SCNAs for TCGA Mutation/Variation Calling Benchmark 4?

<p>Can anyone tell me what is the ratio of heterozygous SNPs/INDELs/SVs vs. homozygous SNPs/INDELs/SVs in an individual?</p>

<p>Hello,</p> <p>Can anyone tell me how to calculate <a href='http://bio-bwa.sourceforge.net/'>bwa</a> mappability score with specific parameters? Is there such existing tools?</p> <p>Thanks</p> <p>Eric</p>

<p>Can anyone tell me which target region file does CEU trio (<a href='ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/'>ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/</a>) use? In addition, Where can I find this trio's variants, including structural …

Hi, Where can I download `ws182` genome of C. elegans. I tried using Ensembl ([link](http://useast.ensembl.org/Caenorhabditis_elegans/Info/Index)), but they only have until ws190. Can anyone tell me …

<p>Can anyone tell me what is the meaning of the SNP filtering parameter 'Read Position' in some papers? I found the explaination 'Average variant position …

<p>Hello,</p> <p>Does anyone know from where I can download the allele frequency of 200 Danish exomes ( hg19 build ) ?</p> <p>Thank you.</p>

<p>Can anyone tell me where I can find 1000GP CEU Trio's (NA12892, NA12891, and NA12878) validated variants or genotyping data?</p>

<p>What are the differences between ensembl db releases for the same genome build?</p> <p>For example ensembl's current release is 63 for the current human genome …