Thanks Rm! I certainly can find the bam file from the above link, but I can not find the vcf file (containing validated SNPs and Indels). Do you know where I can find these file?
Why is it so hard to find CEU / NA12891 on 1000 Genomes: If I do a site search: http://www.internationalgenome.org/search/?q=NA12891 Nothing comes up. If I …
<p>I am trying to assess SV calling tools on WGS data. I know that Illumina released high-coverage data for the CEPH/Utah Trio (NA12878, NA12891, NA12892) …
What whole genome datasets would you prefer to be used for benchmarking purposes (such as for benchmarking aligners, callers, etc.)? While NA12878 (as well as …
Hello, I'm interested in comparing the genotypes from Genome in a Bottle's NA12878 **(GIAB)** to those of her parents (NA12891 and NA12892). I downloaded GIAB's …
<p>Can anyone tell me which target region file does CEU trio (<a href='ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/'>ftp://ftp-trace.ncbi.nih.gov/1000genomes/ftp/technical/working/20120117_ceu_trio_b37_decoy/</a>) use? In addition, Where can I find this trio's variants, including structural …
<p>Can anyone tell me what is the meaning of the SNP filtering parameter 'Read Position' in some papers? I found the explaination 'Average variant position …