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Mirna-Target Gene Network

What bioinformatics analysis can be carried out with human miRNA -target gene network?

gene network
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updated by Jonathanjacobs Jonathanjacobs • written by Mandar • Mandar

With just a group of putative miRNA targets alone, or do you also have paired expression data?

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written by Devon Ryan Devon Ryan

I'm quite sure there are a lot of possibilities for analysis -- what do you want to do with your data? A more specific question would help us give you more input than an open ended question like this.

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written by Josh Herr Josh Herr

I just have a list of diabetis candidate genes and miRNAs targeting these genes now i want to see the regulation in the network.how to go about it?

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written by Mandar • Mandar

1 answer

If you have just miRNA profiling data (small RNA-Seq data perhaps?) the types of analysis is fairly limited since the important piece of the puzzle is the actual effect on the transcriptome (typically). If you have paired expression data from the --same samples--, then I would recommend looking into using Ingenuity Pathway Analysis suite (IPA). Alternatively, if you're on a tight budget and are looking for an open source option - there's a link list page here (http://integrated-analysis.gene-quantification.info) than can get you started.

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written by Jonathanjacobs Jonathanjacobs

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