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miRNAs interaction networks analysis

Hello all , what is the best approach for miRNA and predicted target gene (without expression data) interaction networks analysis?

mirnas networks
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updated by Leite Leite • written by Sam Sam

2 answers

For each of the tools mention above, except miRNet, I found they do not allow multiple queries at a time. miRNet seems to be good to retrieve interactions from a list of miRNAs/genes. Are there any other alternative tools that allow batch query?

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written by Arindam Ghosh Arindam Ghosh

Hello Sam,

i suppose you mean for a group of target genes, search for known miRNA regulators or infer novel predictions. DIANA is a nice place to start from my personal experience:

http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=site/page&view=software http://diana.imis.athena-innovation.gr/DianaTools/index.php?r=taverna/index

Best,

Efstathios

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written by svlachavas svlachavas

DIANA-microT web server is under maintenance, could introduce any other?

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written by Sam Sam

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