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Visualising Peaks On Chromosomes/Ideogram

Hi!

I have 3 sets of peaks in BED format and would like to visualise them on an ideogram. Something like Figure A:

but instead of two towers for each chromosome would prefer to have 3 as I have three sets.

What I have seen in biostar regarding this are the threads likeVisualize Chromosome With Python ?

Although I modified the script in the second link to get the chromosomal distribution of the 3 peaksets but it doesn't look nice and would prefer something like the one in first link.

I guess a lot of guys working in ChIP-seq data analysis have done this before, Kindly help with the codes.

Thank you

chip-seq
• 315 views • link
written by ChIP ChIP

No, it is bit different, and with all due respect if you think this question doesn't have a novel slant, could you please pick any three random sets of peaks and map them on ideogram :) ....... It will make me very happy ...... I know its bad to argue with a moderator

• 0 views • link
written by ChIP ChIP

Please explain better what is different, also, if you have some example data and code this would make it easier for us. It is your task to explain your setting precisely, so we don't have to guess. As your question is now, it is very hard to see what makes the difference from the existing question. Will open it anyway, in the hope it gets improved. Try to be more precise in your specification and also list what you have already tried and why it didn't work out.

• 0 views • link
written by Michael Dondrup Michael Dondrup

No, it is bit different, and with all due respect if you think this question doesn't have a novel slant, could you please pick any three random sets of peaks and map them on ideogram :) ....... It will make me very happy ...... I know its bad to argue with a moderator

• 0 views • link
written by ChIP ChIP

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