Orthomclpairs Problems -----Orthomcl

When I use orthomclPairs, it produced three files. However, all of these three files ( coothologs.txt, inparalogs.txt and orthologs.txt ) are empty..

Anyone can give me suggestions?? Thanks

orthomcl

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updated 4.5 years ago by Ram

• written 13.2 years ago by wang.qiang.prc •

Give us some more details: what command did you run? Did it generate mclinput file? how many genomes are you using for orthoMCL?

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written 13.0 years ago by arnstrm

1 answer

When you do the blast search, do you do all vs all blast (i.e. not just blast of query set vs a different set)? If you don't, you get these three zero length files.

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updated 4.5 years ago by Ram

• written 11.7 years ago by Peter vH

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