Missing mappability file for mm10

I would like to use HMMcopy and ichorCNA for mm10. It looks there are no Mappability or Uniqueness of Reference Genome from ENCODE for mm10, so I can not generate the segmentation file. Anyone has already produced Mappability files for mm10 and wants to share? Any other suggestions?

Thanks

Marco

mm10 mappability

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updated 5.0 years ago by Ram

• written 7.1 years ago by fabbri.marco •

There is a DNase mappability file available from ENCODE here.

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written 7.1 years ago by GenoMax

Thank you but I do not think I can use it for HMMcopy

Marco

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updated 5.0 years ago by Ram

• written 7.1 years ago by fabbri.marco •

hi there. did you ever figure this out? i have the same problem

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written 5.0 years ago by heskett •

0 answers

No answers yet.

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