Why homer makeTagDirectory output an empty TagDirectory
I am trying to analyze Hi-C data using Homer4.11. I am stuck in the step of makeTagDirectory. After trim and bowtie2 alignment, I used the basic argument of makeTagDirectory according to the instruction. However, each time I got an output TagDirectory with all the files with tags.tsv extension are empty. Could anyone offer any suggestions? Thanks!
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xiaoyonf •
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