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Convert Bed To Vcf4.0

Hi here,

I have genotype in bed format, how can I convert it into vcf4.0 format? thanks

bed vcf conversion
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updated by Hypotheses • Hypotheses • written by Bair • Bair

Do you mean PLINK's BED (binary PED) format or UCSC BED format?

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written by Aaronquinlan Aaronquinlan

2 answers

Daniel,

Have you checked this:

http://vcftools.sourceforge.net/options.html

Hope it helps,
SwatchPuppy

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written by Swatchpuppy Swatchpuppy

Daniel, have you found the answer? The only way I found right now is to use plink/seq, but there is some problem with setting the reference-allele that I haven't found the answer yet.

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written by Hypotheses • Hypotheses

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