Converting Eigenstrat format to G-phocs-input format
Can someone tell me how I can convert Eigenstrat genotype data into the format required, as input, for G-phocs?
eigenstrat
g-phocs
• 1,842 views
•
link
updated
by
Ram
•
written
by
h.shafiey •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How to convert allele column of HapMap genotype data format into REF and ALT columns of VCF format?
written by Abbas.M •How can we convert Allele column of Hapmap SNP genotype data format into ALT and REF columns of VCF format? In HapMap format, there is …
-
BAM to G-PhoCS file format conversion
written by mrnlmishra •Hello, It will be great if anyone can help me out in converting BAM alignment file to G-PhoCS format that G-PhoCS can take as input. …
-
Convert GBS hapmap file into Plink bed file
written by hd59430 •Dear all, I'm analyzing more than 200K SNPs across hundreds of diverse plant accessions. We got the data from GBS, so the raw SNP dataset …
-
How to convert impute2 output to mach format
written by ShirleyDai •Hello, I am dealing with GWAS data for survival analysis. After imputation by impute2, I got several files (*.impute2, *.impute2_info, *.impute2_info_by_sample, *.impute2_summary, *.impute2_warnings) for each …
-
How to convert SNP genotyping excel file to .MEGA file format
written by blacktomato27Hi to All, I got 370 SNP genotyping data of 100 individuals in excel file like this **Genotype SNP1 SNP2 ........SNP370 red C/C A/A T/T …
-
Converting illumina raw genotype data into PLINK PED format
written by mohamadi_yahya •Hello How can I convert Illumina raw genotype data into PLINK format?
-
power marker input file format for GBS data
written by dinesh •<p>hi. a warm good morning</p> <p>I am working on powermarker software for identifying the gene diversity from (8000) SNP markers obtained from GBS. the file …
-
powermarker input file format for SNP maker
written by dinesh •<p>hi. a warm good morning</p> <p>I am working on powermarker software for identifying the gene diversity from (8000) SNP markers obtained from GBS. the file …
-
RSAT - consensus tutorial, need suggestion
written by dinesh •Hi community, please tell me how to convert the known TFBSs (Transcription factor binding site) into consensus sequence by using The RSAT-consensus tool. small tutorial …
-
Pca From Vcf Files
written by Rubal7Can anyone recommend a good software for doing Principal Component Analysis from data in VCF file format, or the most straightforward format to convert the …
just a comment, often eigenstrat format only contains variant sites whereas G-PhoCS uses all sites in a locus.