Given a VCF file and the info it has, is there a way we can analyze it and understand if the sequence is three prime to five prime or five prime to three prime?
<p>(Warning: newbie question.)</p> <p>The problem: we have a reference strain (diploid) and three experimental strains derived from it. We have the FASTA sequence of the …
<p>Hello Biostars,</p> <p>I was wondering if there is a PLINK file available that has the copy number status of all structural variants (SVs) for samples …
<p>Hello, so I installed a Ubuntu, downloaded VCFtools and extracted it to its home folder and also found this link: <a href="http://www.biostars.org/post/show/50107/installing-vcftools/">http://www.biostars.org/post/show/50107/installing-vcftools/</a></p> <p>if I say …
VCF position assumes the sequence is 5' -> 3' always
http://www.biostars.org/post/show/47711/strand-information-on-vcf/ please use search first