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3' UTR FASTA back to genes

I currently have a fasta file of three prime UTRs, and I need to convert it to a fasta file of protein sequences for the associated genes. Is there a tool that can help with this?

genome gene
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updated by Nicolas Rosewick Nicolas Rosewick • written by underasail • underasail

Is there any reason why the 3' UTRs are fully unassociated with any gene?

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written by cmdcolin cmdcolin

1 answer

Blast the 3'UTR on ENSEMBL website. Then take the gene id found and extract the protein sequence in ENSEMBL biomart.

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written by Nicolas Rosewick Nicolas Rosewick

The species I'm working with isn't in ENSEMBL, but I could probably do the same thing through NCBI.

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written by underasail • underasail

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