Quantify low complexity regions in DNA sequences
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3.2 years ago
Glubbdrubb • 0

I have fasta files with multiple sequences. They are reads that mapped to the genome outside of probe-targeted regions. From a quick perusal, they appear to be repetitive and have low complexity. Is there a way I can quantify their complexity and use that as an explanation as to why those regions were mapped to?

NGS mapping • 424 views
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