Try NGS_Backbone: It can clean sanger, 454 and illumina sequences.

http://bioinf.comav.upv.es/ngs_backbone/cleaning.html#clean-reads

and also "FASTX-Toolkit"

For Illumina data. I use fastx toolkit to do some of the above analysis which you are looking.

For example

Quality filter at Q 12 and atleast 50% good bases and End trimming with quality filter at 12 and minimum length (30 bases) of the read to retain the read.

fastq_quality_filter -q 12 -p 50 -i Input_reads.txt | fastq_quality_trimmer\
    -t 12 -l 30 -o filtered_reads.out.txt

my barcodes are 8-bases long

cat filtered_reads.out.txt | fastx_barcode_splitter.pl --bcfile mybarcodes.txt\
    --bol --exact --prefix filtered_reads.out.txt.

fastx_trimmer -f 9 -i filtered_reads.out.txt.Tag1 \
    >filtered_reads.out.txt.Tag1.txt

Please someone list me the list of 454 sequence quality trimming softwares. I tried fastx toolkit (fastq trimmer and fastq filter), clean_reads, PRINSEQ. Anyother softwares?