Dear all, I need bed files for **admixture** and **map** files for **beagle imputation** for **polyploid** plant. I tried through **Plink** but it do not …

Admixture and hybridization are common in domesticated yeasts. I need to run TreeMix to detect or rule out (there isn't much evidence for it in …

Hello, is there a tool that can find only the reads that span the entire section(s) that I am interested in. Ideally I would just …

hello, I will do whole genome sequencing in apricot. I should do an alignment with my data. I think that I need default parameters to …

1. If I want to repeat NGSadmix 10 replicates for each k value, the following is my command. What flag should I use to set …

How can I use the admixture command to divide a large number of SNPs into subsets? For example, 50K SNPs are divided into 50 subsets, …

*I have several siRNA sequences that I need to find their off-targets.* - How can I efficiently use **NCBI BLAST** to find the off-targets? - …

Hello, I used Kissplice to identify SNPs in RNA-seq data without reference. I'm trying to use those SNPs for population structure analyses (admixture/structure) and for …

<p>Hello, I have been running replicate analyses with ADMIXTURE. They always come out with the same CV value and similar likelihood values, so I was …

<p>When using bwa, I usually do the following:</p> <p>bwa aln -t 4 genome_index reads.txt &gt; reads.txt.bwa</p> <p>bwa samse genome_index reads.txt.bwa reads.txt &gt; reads.sam</p> <p>So, everything …