replicate analyses and divide snp subsetsin admixture
How can I use the admixture command to divide a large number of SNPs into subsets? For example, 50K SNPs are divided into 50 subsets, and each subset has 1K SNPs. After dividing the subsets, I choose the best K value and run all SNPs according to the best K value. How can I change the following commands?
If I want to replicate and run 10 times, what flag should I add to run?
for K in $(seq 1 15); do admixture --cv data.pruned.bed $K -j10 | tee log${K}.out; done grep -h CV log*.out
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