Admixture cv = -nan
When I run the Admixture program against genomic SNP data from multiple samples some of the output cv values = "nan" or "-nan".
The manual does not explain this output - does anyone know whether this is a high or low cv value? Otherwise I cannot determine the best K value for my samples.
Anything helps!
• 2,442 views
•
link
written
by
jcolella.jc •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
PLINK 1.9 and ADMIXTURE 1.3.0 Help with renaming
written by Jens •
-
ADMIXTURE Freezes Right Before Completion
written by maxlaubstein •
-
when choosing the best K for ADMIXTURE should I use delta K method or cross validation error
written by ? •
-
Find common SNPs between high and low depth sequence data
written by evelyn
-
Calling SNPs with low coverage
written by devin.porter92 •
-
CV error in admixture and submiting the job on the cluster
written by dirranrak •
-
Standard error of cross-validation estimates in software ADMIXTURE
written by manfred.mayer5 •
-
Help making ADMIXTURE output digestible
written by devenvyas
-
What is the Trinity setting max_pct_stdev?
written by Ekarl2
-
Tajimas D And Fu And Li'S Neutrality Tests - P Values?!
written by User 7433 •
My guess would be that this looks like a divide by zero error -> infinity.