Have someone found the solution to this problem? I am facing the same issue
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I ran ADMIXTURE program as the manual told me to like this
admixture -j100 --cv prunedData.bed $K | tee log${K}.out
but when I checked the Q results, there were only percentages for each K(ancestry) without sample names. I read the manual but could not find the option for keeping the individual names. did I do something wrong? could someone help me keep the sample names?
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Did you ever figure this out or a work around? I am having the same issue