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rMATS reading only part of gtf issue

Hi all,

rMATs gives me only few events (for SE and MXE) or non (for A3SS, A5SS, and RI).

My gtf file looks fine! And, when I run rMATs with another species data, which means another gtf file, it works pretty well.

I already compared the gtf file with the one (other species), and it is the same.

I have no idea of what is happening! Could anyone please help me here?

Valeria

rna-seq

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