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baunruh
baunruh
Reputation:
10
Joined:
8.9 years ago
Last seen:
8.6 years ago
Latest posts by user
0 votes
1 reply
2.4K views
Is there something wrong with my GTF file that I am trying to use to analyze repeats in HOMER? How do I tell?
rna-seq rna-seq sequencing software error
written by baunruh • baunruh
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0 replies
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Comment: C: Tophat Error Unable to find file in temporary folder that is clearly there
written by baunruh • baunruh
0 votes
2 replies
2.1K views
Tophat Error Unable to find file in temporary folder that is clearly there
rna-seq software error rna-seq next-gen alignment
updated by GenoMax GenoMax • written by baunruh • baunruh
0 votes
1 reply
0 views
Comment: C: Does anyone know how to condense genes in HOMER? (-condenseGenes is not working
written by baunruh • baunruh
0 votes
1 reply
0 views
Comment: C: Does anyone know how to condense genes in HOMER? (-condenseGenes is not working
written by baunruh • baunruh
1 vote
3 replies
3.7K views
Can I add TPM values of Isoforms of the same gene to get total gene expression?
rna-seq next-gen sequencing
updated by pattymoy1990 • pattymoy1990 • written by baunruh • baunruh
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0 replies
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Comment: C: Does anyone know how to condense genes in HOMER? (-condenseGenes is not working
written by baunruh • baunruh
0 votes
1 reply
0 views
Comment: C: Does anyone know how to condense genes in HOMER? (-condenseGenes is not working
written by baunruh • baunruh
0 votes
1 reply
0 views
Comment: C: Does anyone know how to condense genes in HOMER? (-condenseGenes is not working
written by baunruh • baunruh
0 votes
10 replies
3.0K views
Does anyone know how to condense genes in HOMER? (-condenseGenes is not working properly for me)
rna-seq rna-seq software error alignment
written by baunruh • baunruh
0 votes
0 replies
0 views
Comment: C: Why do most papers with bioinformatic results present genes as though there is o
written by baunruh • baunruh
0 votes
0 replies
0 views
Comment: C: Why do most papers with bioinformatic results present genes as though there is o
written by baunruh • baunruh
0 votes
0 replies
0 views
Comment: C: Why do most papers with bioinformatic results present genes as though there is o
written by baunruh • baunruh
0 votes
2 replies
0 views
Comment: C: Why do most papers with bioinformatic results present genes as though there is o
written by baunruh • baunruh
0 votes
7 replies
2.4K views
Why do most papers with bioinformatic results present genes as though there is only 1 isoform in the results, unless the paper specifically addresses alternate isoforms? (RNA-seq question)
rna-seq assembly alignment next-gen software error
written by baunruh • baunruh
0 votes
0 replies
0 views
Comment: C: How do we include the actual gene name with the transcript ID from mm9 gtf?
written by baunruh • baunruh
0 votes
2 replies
1.7K views
How do we include the actual gene name with the transcript ID from mm9 gtf?
rna-seq rna-seq alignment next-gen genome
written by baunruh • baunruh
0 votes
1 reply
0 views
Comment: C: Getting Error with bowtie2! "Error: Couldn't build bowtie index with err = 1"
written by baunruh • baunruh
0 votes
4 replies
3.7K views
Getting Error with bowtie2! "Error: Couldn't build bowtie index with err = 1"
rna-seq sequencing alignment bowtie tophat
updated by GenoMax GenoMax • written by baunruh • baunruh
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