WGS Metagenomics mapping for functional annotation (KEGG/ other database)?

Hi, I want to annotate functional data from whole genome metagenomics. Is there any existing pipelines/tools to build KEGG database/other for functional annotation?

Thanks in advance.

metagenome kegg functional

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written 5.5 years ago by MSRS

Hi, you can use metaCyc. Check Fun4me for more information.

https://link.springer.com/protocol/10.1007/978-1-4939-7015-5_3

https://sourceforge.net/projects/fun4me/

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written 5.5 years ago by Fatima

You can use eggnog-mapper (also available as a standalone, e.g. via (bio-)conda).

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written 5.5 years ago by cschu181

Thank you very much for your contribution here. I also found FMAP.

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written 5.5 years ago by MSRS

0 answers

No answers yet.

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