Kraken2 Error in buildind NCBI bacterial database

Hi,

I am trying to build an NCBI RefSeq database of bacteria with Kraken2

kraken2-build --download-library bacteria --db bacteria

Error messages

rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

Any solution? Thanks in advance.

sequencing ncbi refseq

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written 5.8 years ago by MSRS

1 answer

Similar issue here -> https://github.com/DerrickWood/kraken/issues/114#issuecomment-610912961. Maybe it will help.

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written 5.8 years ago by Medhat

Thank you Medhat, It works.

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written 5.8 years ago by MSRS

It was recently fixed: https://github.com/DerrickWood/kraken2/commit/7d9252d6116d2c0dc60563848f5ab0ab0ddc965e

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written 5.8 years ago by igor

Right, it looks like @shaminur has an old version, thanks igor.

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written 5.8 years ago by Medhat

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