This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Determination the KO numbers for the genes

Hello everyone, I would like to ask if there is any online tools to determine the KO numbers of the genes? For example, I want to know the list of KO numbers of my Acid and bile salts genes. Thank you in advanced.

ko number genes annotation kofamkoala
• 1,439 views • link
updated by Antonio R. Franco Antonio R. Franco • written by Maryam Sophea • Maryam Sophea

1 answer

Look into KEGG by prior selection of your organism

If you have the protein sequences and cann't find the KO codes, look for BlastKoala which is a tool included into KEGG to annotate them

• 0 views • link
written by Antonio R. Franco Antonio R. Franco

Hello, @Antonio R.Franco...How about KOFAMkoala? Does the tool can help in determining KO numbers? And is the pathway that linked in the KOFAMKOALA help in determine KO numbers? Because now I have some list of genes that related to probiotic bacteria but then I dont have KO numbers in order to annotate them...For example, i do not have KO numbers for acid and bile salt protein..Thank youin advance.

• 0 views • link
written by Maryam Sophea • Maryam Sophea

Log in to answer this question.

More posts like this