Finding pathways using Protein GI accession numbers
Hello,
I have a list of Protein GI accession numbers. I know that we can enter a list of gene names into REACTOME to obtain the related pathways. I would like to do this using Protein GI numbers only, on REACTOME and/or KEGGS, or it could be any other online database. Does anyone have an idea?
Thanks
1 answer
You can use Kegg (Kyoto Encyclopedia of genes and genomes) with protein GI accession numbers for comparative studies of your protein and also can obtain numerous related biological pathways within it. In addition, you can also use PharmGkb.
Regards,
Garima Verma
Log in to answer this question.
More posts like this
-
protein databases with GI numbers
written by yp19
-
converting accession numbers to Gene Symbol
written by R •
-
About NCBI using non-redundant protein to track the genomic records
written by horsedog •
-
how to use keggs pathways to create a network
written by AQ7 •
-
Pathway analysis programs
written by benzhang •
-
Go annotation/ Blast2GO: Why can RefSeq mRNA accession numbers not be associated with GO terms?
written by belinda-k •
-
How to query nr database using a list of GI numbers to get xml files?
written by ngs101.com
-
How to download GI number and locus tag number for organism?
written by fernan23 •
-
NCBI Protein GI to Genome Accession
written by Sej Modha
-
Get Fasta -Protein Sequences for Given protein names(Homo sapiens)
written by genie66 •
Hello,
You can convert your Protein GI accession numbers to choice of IDs or IDs used in those programs using following two links:
then converted IDs like Gene Names can used in Reactome or similar kind of databases.
Hope it helps!