Get Fasta -Protein Sequences for Given protein names(Homo sapiens)
I have a list of protein names and I wanted to get the fasta sequence of all the proteins in the list. In batch entrez it requires GI or accession number, but I have only protein names! Is there is any other way to download sequences in batch!? Please help me
1 answer
You should be able to provide an search term to esearch, but searching by gene name can be tricky, genes with similar names will also get downloaded. You should check the downloaded data before using it, also remember that you will likely capture all the various isoforms of the protein. You should manually validate the data you've downloaded before proceeding.
Log in to answer this question.
More posts like this
-
How to download protein sequences
written by Nelo •
-
How to download fasta sequence of my interest from NCBI?
written by Kumar
-
Add a column of "description of proteins" against the accession number in tab delimited file.
written by adeel.maliks20 •
-
proteome download, human gut microbes
written by Nitha •
-
NCBI feature table sequence extraction
written by Prasad
-
How to retrieve all fasta sequences using Assembly/BioProject ID using Entrez Programming Utilities
written by fengzys
-
NCBI Protein GI to Genome Accession
written by Sej Modha
-
Mapping peptide to the source genomic region
written by genie66 •
-
Retrieve batch subject span FASTA
written by kgousset •
-
Perl code to get starting and ending position of list of peptides from the protein sequence of list…
written by genie66 •
