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Change NBCI accession numbers to UNIPROT identifiers
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15 months ago
Darrill • 0

Hi everyone, I have a list of NCBI Accession numbers such as:

YP_009332565.1
YP_009326565.1
YP_002354191.1
NP_028703.1
etc

And because mmseq taxonomy only deal with Uniprot id I need to convert them into Uniprot ids.

Does anyone have an idea or a tools to do such a work? Thank you for your help.

ncbi uniprot • 252 views
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I see I see thank you. But I'm looking for a program to run in terminal to include it on my pipeline directly...

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For programmatic mapping of IDs, you can use UniProt's REST API as described here: https://www.uniprot.org/help/api_idmapping

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Thanks a lot it was what I was looking for.

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10 months ago
Benn 6.9k
Netherlands

You can use the uniprot website:

https://www.uniprot.org/uploadlists/

Use as input "RefSeq Protein" and as output "UniProtKB"

From your query only two are correct though...

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