Change NBCI accession numbers to UNIPROT identifiers
Hi everyone, I have a list of NCBI Accession numbers such as:
YP_009332565.1
YP_009326565.1
YP_002354191.1
NP_028703.1
etc
And because mmseq taxonomy only deal with Uniprot id I need to convert them into Uniprot ids.
Does anyone have an idea or a tools to do such a work? Thank you for your help.
1 answer
You can use the uniprot website:
https://www.uniprot.org/uploadlists/
Use as input "RefSeq Protein" and as output "UniProtKB"
From your query only two are correct though...
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I see I see thank you. But I'm looking for a program to run in terminal to include it on my pipeline directly...
For programmatic mapping of IDs, you can use UniProt's REST API as described here: https://www.uniprot.org/help/api_idmapping
Thanks a lot it was what I was looking for.