Is OMA suitable for prediction of GO function in metagenomic datasets?
Greetings,
Recently I have been trying OMA to predict GO functions. I was wondering if using OMA is suitable for metagenomic datasets for the same purpose of prediction GO function similar to how EggNOG or Interpro can be used.
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clement.train •
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crl111222 •
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crl111222 •
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Hi crl111222,
Indeed you can used OMA to predict GO function on your metagenomics dataset.
- You can use the GO prediction online tool in OMA (https://omabrowser.org/oma/functions/) to infers GO annotation for your whole genomes at once
Or
- Infer orthology between your genomes using the OMA standalone tool (https://omabrowser.org/standalone/ for more informations) that will also provides GOA predictions.
If you have any problems using the tools please read https://omabrowser.org/oma/tools/ or contact us again.
Clement
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