Visualizing alternative splicing events
Dears,
I have TPM read counts of RNA-seq data from Salmon, then I have used SUPPA2 for alternative splicing events detection. The point is, I need a tool to visualize the alternative splicing events across conditions? and what files should I consider for these visualization, TPM read counts or psi files from SUPPA2?
I really appreciate your help,
Nour
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Nelislam4 •
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I would show the PSI values in boxplots per group as well as read coverages for individual events similar to the one depicted in this figure: Fig4.f
Thanks for your response, actually the link requires login domain as certificate.
Did you means avg PSI values which is in .clustvec file?
Thanks, Nour
sorry that was through a proxy, the link should work now.