Blobtools output files
Can somebody interpret these blobtools graphs please. My genome is an algal species.
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Ram
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kristina.mahan
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kristina.mahan
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and which contigs are contaminants and need to be removed?
entire assembly is ~2000 contigs.
no-hits: 594 contigs Bacteria: 252 contigs Proteobacteria: 817 contigs Haptista: 6 contigs Chordata: 17 contigs Euglena: 1 contig Ascomycota: 3 contigs Streptophyta: 7 contigs Chlorobi: 1 contig Chlorophyta: 36 contigs
Most all the Proteobacteria have the same GC content as my organisms but are those all contaminants? So more than half of my contigs are contaminants?