Can anyone suggest me the recent and best pipeline for RNA-Seq data analysis
I am working on grapevine whose genome is recently available. So, I will be mapping my reads to genome. (It is reference based).
I will be mainly checking the differential gene expression analysis at different different time points.
which is the most advanced pipeline these days? can anyone suggest me
• 397 views
•
link
written
by
harshraje19 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
tools for miRNA target prediction in plants
written by harshraje19 •
-
DESeq multiple factor question
written by jdhindsa1999 •
-
Can anyone suggest me the pipeline for de novo prediction of miRNAs?
written by harshraje19 •
-
Best pipeline for time course RNA-SEQ analysis for single cell organism
written by Gabby •
-
Selecting of most differentially expressed transcripts
written by Valentina •
-
DESeq2 Normalization of time course
written by EVR
-
EDGE-pro: Estimated Degree of Gene Expression in Prokaryotic Genomes
written by buthercup_ch •
-
Integrated miRNA-mRNA expression pipeline
written by orzech_mag
-
Alignment of genomic resequenced data to reference genome
written by kirannbishwa01
-
Clustering Gene Expression For Time Course Rna-Seq Data
written by Abhi
Hello harshraje19!
Questions similar to yours can already be found at:
We have closed your question to allow us to keep similar content in the same thread.
If you disagree with this please tell us why in a reply below. We'll be happy to talk about it.
Cheers!
Hi Hershraje
For DEG you can use Hisat2 or STAR for Alignment,feature-count or HTseq-Count for extracting genes count table,and EdgeR for differential expression analysis.
good luck.
Lmira