This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to find significantly mutually exclusive expressed genes in TCGA

Hi everyone,

I want to check how some of my interesting genes are statistical significantly mutually exclusive expressed in BRCA-TCGA expression data. Does anyone know how to do this?

Thanks

rna-seq mutual expression correlation
• 2,218 views • link
written by Mike Mike

Mutually exclusive expressed genes or mutually expressed genes?

• 0 views • link
written by zizigolu zizigolu

I am looking for mutually exclusive expressed genes

• 0 views • link
written by Mike Mike

The easiest way is to run Correlation Test for each pair of genes. But there maybe some limitations.

• 0 views • link
written by shoujun.gu shoujun.gu

1 answer

I'm not sure I understand the question, but have you tried using rMATS? (Detection of splice variants ex. mutually exclusive exons)

• 0 views • link
written by 27atcggcta27 27atcggcta27

rMATS is for detect differential alternative splicing events.

• 0 views • link
written by Mike Mike

Log in to answer this question.

More posts like this