How to perform differential expression on proteomics data?
Hi everyone, I have a proteomic matrix with z-normalized TMT data: row proteins - columns patients. I want to perform a differential expression analysis using R. Does anyone know how can I do this since these are not gene expression data? Thank you
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Do you have the intensity values available? If so you can use something like DEqMS or DEP from Bioconductor.
No I only have these data