Hi everyone!

For legacy = F data, does workflow_type = HTSeq counts still work?

This is my code and it fails:

query <- GDCquery(project = "TCGA-BRCA",
                  legacy = FALSE,
                  data.category = "Transcriptome Profiling",
                  data.type = "Gene Expression Quantification",
                  workflow.type="HTSeq - Counts",
                  sample.type = "Primary Tumor")

I want to download only the raw data for protein coding genes.

Thanks!