This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Where can I find a list of mitochondrial tRNA locations?

Hi,

I am looking for genomic locations of tRNAs. It's not in gtRNAdb, mitotRNAdb (no genomic locations). I also didn't see it in gencode and a google search didn't help. Any ideas what I can do? Specifically I need human and mouse.

Thanks!

trnas

as I wrote in my post, none of these appear to have the information I require gtRNAdb specifically states it does not include NUMTs, the other two as far as I can see have no genomic locations,

1 answer

How about RNAcentral. Genomic locations were included for a couple of entries I checked :

Human tRNA
Mouse tRNA

I don't see any mitochondrial entries though.

Perfect! thanks!

Log in to answer this question.