how to convert the UCSC alignment chain file to read-able sequence file · Biostar

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how to convert the UCSC alignment chain file to read-able sequence file

Hi All:

I am looking for pairwise genomic alignment for human and mouse. I was guided to UCSC http://hgdownload.cse.ucsc.edu/goldenPath/hg19/vsMm9/ but the chain file I found did not provide sequence-alignment directly. Do I need to construct the sequence-level alignment from these chain file by other ways?

Thanks in advance!

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pairwise-genomic-alignment

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updated 4.4 years ago by Ram

• written 11.6 years ago by Pei

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