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conversion of case_ids to file_ids TCGA data

Dear all,

I need to convert case_ids of TCGA data to file_ids.

I used TCGAutils but I could not convert the IDs

Can you advice me how to do this?

Regards

Nazanin

tcga case_ids conversion
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updated by adebola.1 • adebola.1 • written by nazaninhoseinkhan nazaninhoseinkhan

2 answers

Hi, where you able to find a solution to this questions as I am in the same shoe?

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written by adebola.1 • adebola.1

Hi Using "GenomicDataCommon" package in R, you will be able to find corresponding TCGA barcodes of the folder names. Then using "Manifest" file of your data, you will be able to find corresponding file names.

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written by nazaninhoseinkhan nazaninhoseinkhan

Thanks a lot

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written by adebola.1 • adebola.1

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