convert entrez ID to miRNA
hi , i have data of microRNA and have preformed alignment usinh HISAT2 and differentially expression using DEseq2 . the result is in tabular form that contains entrez gene ID. i am confused, shouldn't my result contains miRNA id. if no than than how to convert entrez id to miRNA thanks
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mahaamhamid •
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Which tool you are using for Quantification?
That is a strange combination. With microRNA people generally use an aligner that does ungapped alignments.
If you can show examples of ID's you have we can look at getting them converted.
Why don't you try STAR and FeatureCounts then DESEQ2 ?