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VCF annotation of Glycine max

Hey! i want rs_ids in my vcf file.. i have already created the database for Glycine maxv2.1 and generated the fasta file.. kindly guide me how to annotate vcf file using this fasta file and get the rs_ids Thanks

next-gen genome sequence snp
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updated by WouterDeCoster WouterDeCoster • written by kaynat_shaukat • kaynat_shaukat

i have already created the database for Glycine maxv2.1 and generated the fasta file..

Please elaborate: Which database? Created how? Generated which fasta file?

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written by WouterDeCoster WouterDeCoster

1 answer

I have never heard of glycine max, but you can do this with SnpEff and probably a bunch more tools.

See also

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written by WouterDeCoster WouterDeCoster

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