This is a test version of Biostars. For the public version, visit https://www.biostars.org.
problem in annotate my vcf file to SNPdb files or another vcf file ??

hiii all, i am a new student in NGS field. i have a Q to ask for all. please help me to solve the problem. I have vcf file generated by snpEff tool and now I want to annotate this file to other vcf file or SNPdb ? how can I do? please suggest me suitable tools and commands.. Thanks in advance..

snp next-gen
• 2,047 views • link
updated by Jorge Amigo Jorge Amigo • written by rastogi.suraj93 • rastogi.suraj93

2 answers

another quick option would be bcftools annotate: http://samtools.github.io/bcftools/bcftools.html#annotate

but if you need deeper annotation you may want to look at other more complex tools, such as ANNOVAR: http://annovar.openbioinformatics.org/

• 1 views • link
written by Jorge Amigo Jorge Amigo

Log in to answer this question.

More posts like this