How to retrieve cDNA sequences from EMBL for a large number of accessions?

Hi,

Could someone suggest how to retrieve cDNA sequences from EMBL for a large number of accessions? I read that one can use DBFETCH but I do not know how to use that. Appreciate your help!

Thanks a lot

sequence gene

• 1,114 views • link

written 7.4 years ago by mbglml •

• 0 views • link

written 7.4 years ago by finswimmer

0 answers

No answers yet.

More posts like this

How to amplify prey cDNA library for Yeast two Hybrid (y2h)?
written 3 months ago by Usama •

I wanted to ask a quick question. I have just one vial of a prey cDNA library already transformed into the Y187 yeast strain and …
Finding the Homologous sequences
written 2.8 years ago by siu

Hi, I want to identify the homologs of my seed sequences in large number of proteomes. I know that I can use Blastp, HMMER and …
How to remove chimera from 16S Sanger contigs
written 2.9 years ago by eimanpharmacist •

Hi, I have a bunch of 16S Sanger sequences, and I used UGENE to trim and edit sequences, then generated the contig using CAP3 embedded …
How to download fasta sequence of my interest from NCBI?
written 4.9 years ago by Kumar

Hi all, I am trying to download the protein fasta sequence of "HSP listeria monocytogenes" from NCBI. Please suggest how I can download these all …
retrival from arb format
written 8.2 years ago by nittaym •

Hi! I'm working on nifH (nitrogenase) sequences. I've looked a lot for the best DB for nifH and came up with a DB that seems …
Change maximum number of sequences on source code of ClaustalW
written 9.6 years ago by mfonsecarossi •

Hey, good evening! I have a very large dataset of protein sequences and would like to know how I change the ClustalW source code to …
Retrieve the sequence based on the start and end position in the cuffmerged.gtf
written 10.5 years ago by Chao.wang2 •

Hi guys, Is there any one who knowns how to retrieve the gene sequence based on the staring and ending position in the cuffmerged.gtf file. …
dbFetch from EBI with bogus accession number returns valid record
written 11.2 years ago by Jeroen Van Goey

I'm using [dbFetch][1] from EBI in a project. I construct URLs from the format https://www.ebi.ac.uk/Tools/dbfetch/emblfetch?id=[ACCESSION_NUMBER] to retrieve sequences, e.g.: https://www.ebi.ac.uk/Tools/dbfetch/emblfetch?id=CO069431 Accession numbers need to be …
International Protein Index: No Entries Found
written 14.3 years ago by Pierre Lindenbaum

<p>I've been asked to retrieve the fasta sequences of a set of proteins identified by their <a href="http://www.ebi.ac.uk/IPI/IPIhelp.html">International Protein Index</a>. I've been using <a href="http://www.ebi.ac.uk/Tools/dbfetch/dbfetch">http://www.ebi.ac.uk/Tools/dbfetch/dbfetch</a> …
How To Retrive The Dna Sequence From A List Of Embl And Geneid
written 16.4 years ago by Kirsley •

Hi everyone, As input files, I use swissprot files. I have a perl script which parses all the files to retrieve all the EMBL ids …