retrival from arb format
Hi! I'm working on nifH (nitrogenase) sequences. I've looked a lot for the best DB for nifH and came up with a DB that seems comprehensive (https://www.jzehrlab.com/nifh ). Problem is, it's in arb format! I tried to export the DB to other formats, the problem is that I can only retrieve the sequences with no species info, only an ID which doesn't correspond to any known GeneID. Someone has experience with this old-school program and could maybe help me with how to retrieve the info?
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Hii.. I am also working on the same kind of data and wish to do taxonomy assignment to my OTU's.. have you find out any way to use this nifH arb database.. or any other way to do taxonomy assignment to nifH amplicon data?