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Suggestions for R/Bioconductor packages for GSE analysis
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19 months ago

Hi everyone, which are the most used R / Bioconductor packages to perform a gene set enrichment analysis?

Thanks, Kieran

R • 190 views
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Thanks a lot! Very helpful

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17 months ago
benformatics • 870
ETH Zurich

Based on the 100 most downloaded Bioconductor pacakges:

fgsea

clusterProfiler

Category

topGO

GOstats

The Broad also has their own R script/package I think: https://software.broadinstitute.org/cancer/software/gsea/wiki/index.php/R-GSEA_Readme

Feel free to correct me if I missed some.

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