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Regarding Differential Gene Expression Analysis

Hi,I have done differential gene expression analysis using limma,then did gene set enrichment analysis and annotation now i have to do clustering of genes and find interactions between them using R and bioconductor packages.Can anybody provide with the packages that can be used coz i have to do network generation using R.Thank you.

gene ontology limma annotation
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updated by Sean Davis Sean Davis • written by shaikhfarahdeeba • shaikhfarahdeeba

You can check R package: WGCNA. They have a nice tutorial. (or) you can just create correlation matrix using 'cor' function and create a network based on that too

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written by Diwan Diwan

1 answer

Take a look at the Bioconductor Task View for gene expression networks:

http://www.bioconductor.org/packages/release/BiocViews.html#___Networks

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written by Sean Davis Sean Davis

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