Setting bins on whole Genome to take snapshots at SV possible positions
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
don't know exactly how to find my reference genome
written by hamid.gaikani •
-
Pindel minimum deletion length
written by thomas.faraut •
-
Mycobacterium whole genome sequencing
written by drparomita.bhatt •
-
visualization of the translocations on the vertical scale
written by Bogdan
-
Differences in the number of genotyping data for GWAS
written by rizky_dsatrio •
-
Pacbio sequencing database
written by jerald •
-
Shortening Whole genome for Benchmarking
written by bshifaw •
-
Biopython or Bioperl help
written by iamtuttu5 •
-
Mapping Contigs based on Reference Genome
written by Tanvir Ahamed
-
Extract A Subrange Of Sequences From A Genbank File
written by Iván •
If I understand you correctly, you might want to take a picture of the read alignments like from a BAM file in the region of the a SV. If so, this could be done in IGV (http://software.broadinstitute.org/software/igv/)
see visualize CNV data based on WGS