Differences in the number of genotyping data for GWAS
If we want to do GWAS in agriculture, which is the better option among these cases:
I get 200 whole-genome data and also 200 plant accessions. I use 200 whole-genome data for SNP-calling and GWAS analysis.
I get 2000 whole-genome data, but I only have 200 plant accessions. I use 2000 whole-genome data for SNP-calling and GWAS analysis.
Please kindly help me with the explanation as I am new in this field.
Thank you,
Regards
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rizky_dsatrio •
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