This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Mapping Contigs based on Reference Genome

Hello everyone,

I have set of contigs form several bacterial genomes. Now I want to map and visualize those contigs based on a reference genome

Layout could be as follows:

Ref Genom      > [Whole Genome sequence]
Genom1          > [Set of contigs]
Genom2          > [Set of contigs]
............
Genom 10       > [Set of contigs]

Can anyone please help me, how I can achieve this type of analysis including mapping and visualize.

Thanks in advance.

contig genome mapping
• 3,757 views • link
updated by Ram Ram • written by Tanvir Ahamed Tanvir Ahamed

1 answer

Two easy to use software for what you want are Mauve and BRIG.

• 0 views • link
written by h.mon h.mon

Log in to answer this question.

More posts like this