how to download ICGC germline mutation data?
how to download ICGC germline mutation? Or is it possible to download it? Anyone can help me with this?
icgc
germline
• 1,728 views
•
link
updated
by
GenoMax
•
written
by
sxs870917 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Characterization of mutations in vcf files
written by RUBEM •Is it possible to classify population, germline and somatic mutations from a vcf file? I have some vcfs files that were generated from a variant …
-
germline heterozygous SNPs
written by samuelHi, Does anyone know if it is possible to download either a tsv or vcf file of the germline e.g. 'common' heterozygous SNPs (human, hg19)???
-
ICGC data download
written by Zahra •Hi everyone! I have recently gained access to the ICGC data portal and now want to download data on my local server. would you mind …
-
ICGC simple somatic mutations
written by amenshamim •I have downloaded ICGC donor id DO52673, It contains total nine files, FI675848, FI666508, FI385355, FI384962, FI384957, FI364287, FI364281, FI269878, FI269874. In the ICGC site, …
-
Database for germline mutations
written by kaurravneet4123 •Hi All, Please can anyone suggest a database for germline mutations. I am looking at dbSNP and gnomAD- but by using these databases, how can …
-
Downloding only RNA-Seq Raw counts data from ICGC
written by David_emirHi, I wanted to download RNA-Seq raw counts data from ICGC with samples as columns and gene_symbol as row names. I tried using dplyr but …
-
Downloading controlled access data from ICGC for specific ID?
written by ivivek_ngsI remember there are only few posts regarding the controlled access data download from ICGC and so I am trying to ask a specific question …
-
Is they any R package to download processed miRNA expression levle from TCGA?
written by jackHi all, I would like to download processed miRNA expression levels for different cancers from TCGA. I was wondering whether is there any package such …
-
Mutation data from ICGC
written by kofujikura •I want to download the mutation data of 50 specific genes by individuals from ICGC data. Is it possible to get this information without difficult …
-
Identifying the tumor clones and subclones with VAF from VarScan2
written by ivivek_ngsDear Users, I would like to know , that given I have only one tumor and its normal type and I have the sets of …
Analyzed germ-line data is available from ICGC portal. Otherwise you will need to apply for access.