germline heterozygous SNPs
Hi, Does anyone know if it is possible to download either a tsv or vcf file of the germline e.g. 'common' heterozygous SNPs (human, hg19)???
germline
snps
heterozygous
• 1,026 views
•
link
updated
by
Pierre Lindenbaum
•
written
by
samuel
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Somatic truth set
written by samuelDoes anyone know if there is a somatic truth set vcf available? I know there are now several available for germline samples from [GIAB][1] I …
-
GIAB Truth Set
written by samuelHi, Does anyone know what coverage the GIAB truth set is for NA12878? I was wanting to download the vcf from here [GIAB truthset vcf …
-
CAAD score for SNPs vcf file
written by Eliza •Hi, I have a VCF file of only SNPs. what I wish to do is for every SNP to download the CADD score from here: …
-
Tumour only B-allele frequency
written by samuelDoes anyone know if it is possible to perform B-allele frequency / LOH analysis on tumour only samples? (i.e. no matched normal controls samples). I …
-
How to calculate frequency of heterozygous SNPs in multisample VCF file and to filter out over a s…
written by kumar.vinod81Hi, I've a multi-sample vcf file of a highly heterozygous plant species. I could calculate the individual-wise heterozygosity using -het option in vcftools. But I …
-
Looking for a database containing the least-conserved, most highly polymorphic SNPs (or regions) of…
written by fwuffyHi- I need a reliable method to identify SNPs in the human genome with the most variability. Does anyone know of a data file I …
-
Software to predict impact of SNPs or Indels
written by williamsbrian5064Hi, I work with nonhuman data. I have a bunch of SNPs that I want to predict how deleterious the SNP is. I know there …
-
Where to download processed time course RNA-seq data in human?
written by Naresh D J •Hi, Does anyone know where I can download the processed any time course RNA-seq data in human in terms of either raw counts, RPKM, CPM …
-
Hapmap--percent common variation explained
written by kbountre •<p>Hi--</p> <p>I'm new to hapmap and wondered how to figure out what % of the common variation in a gene I'm able to explain using …
-
Variant call format (VCF) file, how to get statistics per sample?
written by TailsIt is quite common to find tools that report on statistics per variant/marker, given a vcf file, but does anyone know of a tool that …
download gnomad , filter for AF ~ 0.5