Predicting ligand bind to RNA
Which would be the best software to predict the binding of specific ligands to a secondary RNA structure?
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Kevin Blighe
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CARMEPLAS •
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CARMEPLAS •
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I have not worked in this area; however, your general question will receive my general answer: The Matthews group appears to have worked in RNA secondary structure analysis for many years. You may try to follow their work and reach out to them:
- RNAstructure: web servers for RNA secondary structure prediction and analysis
- RNA Secondary Structure Analysis Using RNAstructure
Also see this previous post, which has no up-votes:
Another related post, on Biology Stack Exchange:
Good luck
Kevin
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